LOCUS       NC_009473               5629 bp    DNA     circular BCT 24-MAY-2007
DEFINITION  Acidiphilium cryptum JF-5 plasmid pACRY07, complete sequence.
ACCESSION   NC_009473
VERSION     NC_009473.1  GI:148244127
KEYWORDS    .
SOURCE      Acidiphilium cryptum JF-5
  ORGANISM  Acidiphilium cryptum JF-5
            Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
            Acetobacteraceae; Acidiphilium.
REFERENCE   1  (bases 1 to 5629)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
            Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and
            Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of plasmid7 pACRY07 of Acidiphilium cryptum JF-5
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5629)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2007) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5629)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
            Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and
            Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2007) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000695.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4000181
            Source DNA and bacteria available from Timothy Magnuson
            (magntimo@isu.edu)
            Contacts: Timothy Magnuson (magntimo@isu.edu)
                      Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. It is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5629
                     /organism="Acidiphilium cryptum JF-5"
                     /mol_type="genomic DNA"
                     /strain="JF-5"
                     /db_xref="taxon:349163"
                     /plasmid="pACRY07"
     gene            complement(897..1094)
                     /locus_tag="Acry_3628"
                     /db_xref="GeneID:5159434"
     CDS             complement(897..1094)
                     /locus_tag="Acry_3628"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001220362.1"
                     /db_xref="GI:148244128"
                     /db_xref="GeneID:5159434"
                     /translation="MITTSYDPEADALYVRFAPKGATIAETRELEPGILLDMDEIGHL
                     VGIEVLGVRSRATLPAIPYAA"
     gene            complement(2806..3369)
                     /locus_tag="Acry_3629"
                     /db_xref="GeneID:5159436"
     CDS             complement(2806..3369)
                     /locus_tag="Acry_3629"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001220363.1"
                     /db_xref="GI:148244129"
                     /db_xref="GeneID:5159436"
                     /translation="MATGNPIVDALDALAAEVAKCTESVKAANPDALTRSVDQAATKA
                     VSSIKTALDGASEAVKEIQKAASDTAQAASSAVEQVAEVRTATRWLNLRSVAVLALAV
                     VLVVSGSLASIWWERHKFHRLHTKVIALRAEVQTERANLKALKAKGARVKWETCGGHL
                     CFEASSDQHSGWVTTKGNIKLVIPRGY"
     gene            complement(3371..4456)
                     /locus_tag="Acry_3630"
                     /db_xref="GeneID:5159435"
     CDS             complement(3371..4456)
                     /locus_tag="Acry_3630"
                     /note="PFAM: MobA/MobL protein"
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL protein"
                     /protein_id="YP_001220364.1"
                     /db_xref="InterPro:IPR005053"
                     /db_xref="GI:148244130"
                     /db_xref="GeneID:5159435"
                     /translation="MAIYRCEIKNISRGQGRSCVAAAAYRHRTRLHDQRQELDHAYTH
                     KGDVELSEIVAPEAAPEWVHDRERLWNAADAAEKRKDARTAKEVLVALPRELNTAEQA
                     SLVREFARAEFASKGLVADIAIHAPKAQDGETQPHAHIMLTTRPLENGNFAKGKDYSL
                     DKPPGIEAIRERWATHCNRALERVRSPERVDHRSLADQRQAALAAAENPAQPEPDRIR
                     AAARAMELDRAPEPKIGPVAMQMARQGRGTRAYALRDAMQVRQDRGMLRTMSRSWEQV
                     RQAGSNLMQTMRERLPGLASVLRQALPLPSALIAATTSPDMQRATQMLDMRAAEKILK
                     TREHENQQRQQQRTPDQGRERGRGIEM"
     gene            4650..4973
                     /locus_tag="Acry_3631"
                     /db_xref="GeneID:5159437"
     CDS             4650..4973
                     /locus_tag="Acry_3631"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001220365.1"
                     /db_xref="GI:148244131"
                     /db_xref="GeneID:5159437"
                     /translation="MAKRTDDEILADLTAKQREIETRINAVKARSKERARKEETRRKV
                     LVGAVILAEAERSEAAKQRLQALLDKHLVRPIDREVFGLPPRPDQSGQAATSSDSTAR
                     PDDAD"
     gene            5065..5613
                     /locus_tag="Acry_3632"
                     /db_xref="GeneID:5159433"
     CDS             5065..5613
                     /locus_tag="Acry_3632"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001220366.1"
                     /db_xref="GI:148244132"
                     /db_xref="GeneID:5159433"
                     /translation="MAKNSRDGNRERAARRRAALAERGIRPIQVLAPDAAHPLIRQAA
                     ALMTRDDAPLEPRAALRRAGGANEPEPGEASPGLAAELEAAKARITEIERQAEAQRVM
                     ADDAAERQRRALEVEQEKARASAEEAQKAARSAQVAEGRAAEALRRAEKAEATIRQAK
                     ALPGLKGRLVRLLAGEVLKWPD"
ORIGIN      
        1 taatagggtt ccaattcttc agctttttgc tgatgctcca agttaaggcg aagtgtgatc
       61 gaccaaggtt cggtcatatg gtcgtaggcg aggattccta cgggtttcgc ggaaaagcca
      121 tccgccatcg aaattttttt ctggaggtca acatgcatca gcatgtttta aatccagcga
      181 tggtgcgtag tttggctgaa ttgatatacg caatcgctgt attgttgaaa gccgtatggc
      241 caaaagggtt taattaacaa taacttctgg gtcatgaaac aattttatca tggcccagtt
      301 tttttattga tattagatat ttctattggc aattcgattt ctaggtctga attataatgg
      361 aaagagggga atttataatt tttgctaaat tttattatat cattgtcaat aatttttgat
      421 ccgctacttt tgtatatttt tactttttcg gcatgaccga gattgtttat ttctaatgaa
      481 ataattggtg atatcttttt aatatgatat ttttcaaaat catttataat atctgattta
      541 taaatagact tcttaaatga tgacatccaa attttttcgt aacttaaagc ggaattttta
      601 ttccaaactt tatgccgacc gatcgacata atattatatc ctacaaatat aacaataata
      661 gaaaacataa taataattgc cgtataccaa agcactggat aaagataata aaataaaata
      721 gataaagcta aagccggaat ccatcctatt ataattccta ttaaaaatcc aaataaatgt
      781 atagataata cgtatgttga aatgaatatt aaaattgaaa ttataaatag taataaatct
      841 aacatcatat tattcgaaaa gagattttct tgaaaaatct atgatgccga atattttcat
      901 gccgcatatg gaattgccgg tagtgttgcc cgtgatcgca cacccagcac ttcgatcccg
      961 actaggtgtc cgatctcgtc catatccagc aggatgccag gctccagttc cctggtctcg
     1021 gcaatcgtcg ctcccttagg ggcgaaccgg acatagagcg catccgcctc gggatcatag
     1081 ctggtcgtga tcacggtctg gctcctcgat caaaactctc tacgatcctg tgcgccgtgc
     1141 cagatgcgaa ggacttcagc gttctggccg acaattcgat aaacgataat gtagggccaa
     1201 atcacggtca gttccctcgt ccctgaaacc aagccgggcc gcccacgctc aggtagatac
     1261 tcaagccgat cacaggccgc tacgagctgc accgcgatgc gagtggctgc ggcagggttt
     1321 tcccggccga tgtggtggcg aatatggaca agatcattga tagcctcagc cgtgaagatt
     1381 accggcattt aggttcggac agctcgtttt cagttcccca ggaaagcagc catttccgag
     1441 cttcctcgta gggtacggtg cgcccggagt ccgcagccgc aatccctttt ttgacggctt
     1501 caacgaaagc ttccgtatca ggatcatctg gcatggatac agggttcggg atcattcagc
     1561 ggactcctct tggtggaggt gagtactacg cgctggcaag tcatgttcta gtccatcaaa
     1621 tggtggttga gatggcggag gctcgccatt accagacggg agttggcgtt cacctggtag
     1681 caatgttgga atttgcctta gaggatcttg gctgatctct tcctgttcgt cggaacgagc
     1741 caaaacttcg gctgagaacc tagcgtagcg gagcttgtcg cgctcttgcg tccaagcaac
     1801 tcggctattg atgactatgg cattggcggc acctttgccg cctatctgaa taacctcaat
     1861 ccaacgttcg ctacggagat cagcgattgc ccgacgaacg gttgcgaccg acatcccgct
     1921 aatcgaggct agggtcgccc acgacgccac cacagcatca ctatgaccca tttgagcaac
     1981 gagatagtgc atcaatgcgg ctgctcgagg tttgctgacg gaaagccgcc cccaagcttc
     2041 atgggaagct cgatcggtct gaatccatct tggaggggag ttggcgttct gagtgagcaa
     2101 ccccctgctc atatgtgcac cattcgtttg cactggagta ttcatatgaa tcactcgtga
     2161 tcgatacggg tgattcatat atgatcacat ctgatccata caaatcaacc ctgctcacct
     2221 aagtgagcag ggggctgctc acttaggtga gcagcccccc ctttgtaaca tattgattta
     2281 attggaaatt ttttcgcccc ctctctatga tcttaggact ggggctcccc ctcatttttg
     2341 tcgtcccggt agtccacagg gaacgagggc cgcgagccgc ccgaagggag gcgaagcgag
     2401 cggcccgaac ttccctgtgg gcccaccggg gcgacgggca ctacgcacgc gcgagcgcgc
     2461 gaggctgcga agttgggaag ggggtgcggg ggaaaccaga tgcggcaaat cgcgatgcga
     2521 tttgaccatg aaaggcggcc ctgacgggcc gcgctagggg aaggtaaggg ctggcgcggg
     2581 cgcgatgcgc cctccgggtc tcccgctctg cgctcgaccc gcgccacgag gtcaggggca
     2641 acgggacggt aagcaaaagc ggcattggag acgaagcggc gaggatggcc gtgaaacccc
     2701 gtcagacggg cgtacacggg ttttttgggt ttggtgctgt tttggggtgt caggacataa
     2761 aacccgttct acggccttct gccgggccgg aatgcccatt ccggatcaat agccgcgtgg
     2821 aatgaccagc ttgatattcc ccttggtggt tacccaaccg ctgtgctggt cactgctggc
     2881 ctcgaagcag agatgaccgc cgcaggtctc ccacttcacc cgcgcgccct tggccttgag
     2941 tgccttgagg ttggcccgtt cggtctggac ctcggcccgc agggcaatga ccttggtatg
     3001 gaggcggtgg aatttgtgtc gttcccacca gatcgaggcg agactgccgc tcaccaccag
     3061 cacaacggcc agcgccagga cggcgactga gcgcagattg agccagcgtg tcgcggtgcg
     3121 gacctcggca acctgctcga cggcgctgga cgctgcctga gcggtgtccg aggcggcctt
     3181 ctggatctcc ttcacggcct cgctggcgcc gtccagagcg gtcttgatgc tgctcacggc
     3241 cttggtggcg gcctgatcga cggagcgggt gagggcgtcc ggattggcgg ccttcacgga
     3301 ctcggtgcat ttggcgacct cggcggcgag ggcatccaga gcgtctacga tggggttgcc
     3361 ggttgccatg ctacatctcg atcccccggc cgcgttcccg gccctggtcc ggtgtgcgtt
     3421 gctgctggcg ttgctggttc tcgtgctcgc gggttttgag gattttctcg gcggctcgca
     3481 tgtccagcat ctgggtggcg cgttgcatgt ccgggctggt ggttgcggcg atcagggcgg
     3541 agggcagggg cagagcctgt ctgagcacgc tggcgaggcc ggggaggcgt tcgcgcatgg
     3601 tctgcatgag gtttgagccg gcctggcgga cctgttccca ggagcggctc atggtgcgga
     3661 gcatgccgcg atcctgcctg acctgcatgg cgtcccggag ggcgtaagcc cgcgtgccgc
     3721 gtccctggcg tgccatctgc atggcgacgg ggccgatctt gggttccggg gcgcggtcca
     3781 gttccatggc tctggcggct gccctgatgc ggtcgggttc gggctgggcg gggttctcag
     3841 cggctgcgag ggcggcctgg cgctgatcgg cgagggagcg gtgatcgacc cgttcggggc
     3901 ttctgacgcg ctcgagcgcc cgattgcagt gggtagccca ccgttcgcgg atggcctcga
     3961 tgccgggtgg cttgtcgagg ctgtagtcct tgcccttggc gaagttgccg ttctcgaggg
     4021 ggcgggtggt gagcatgatg tgggcgtgag gctgtgtctc gccgtcctga gccttggggg
     4081 cgtggatggc gatatcggca accagcccct tgctggcgaa ctcagcgcgg gcgaactcgc
     4141 ggaccaggct ggcctgttcg gcggtgttca gttcgcgtgg gagggcaacc agcacttcct
     4201 tggcggtgcg ggcatccttg cgcttctcgg cggcatcggc ggcattccac aggcgttcgc
     4261 ggtcgtggac ccattcgggt gcggcctctg gtgcgacgat ctcggagagt tcgacgtcgc
     4321 ccttgtgggt gtaggcatgg tcgagttcct gacgctggtc gtgcaggcgg gtacgatgcc
     4381 gataggcggc agcggcgacg caggatcgac cctgaccccg gctgatattc ttgatctcgc
     4441 aacggtagat tgccacagat cggcctcgac gaatgaggaa atcaggttaa gctattttgg
     4501 cggtttgaac aaccacgaaa ggattgagtg cgcggttacg tgttgctgcg caacacccgc
     4561 ggcaatcctg ggggcgttgc ccccgccctg cgggcgcccc ccaccaatgg gcttgcgcgc
     4621 cccttggaac cccgactagt ttttgtgtca tggcaaagcg gacggacgac gaaatccttg
     4681 ctgatctcac cgcgaagcag cgtgagatcg agacgcggat caatgcggtg aaggcgcgct
     4741 cgaaagaacg cgcccgcaag gaggagaccc gccgcaaggt gctggttggc gcggtcatcc
     4801 ttgcggaagc ggagcggtct gaggccgcga agcaacggct ccaagccctg ctcgacaagc
     4861 atcttgtacg ccctatcgat cgcgaggtgt tcgggctacc gccccggcca gaccagtctg
     4921 gccaggcggc tacgtccagc gactcaacag cccgccctga cgatgccgac tgagtctcaa
     4981 tcggccctga accatagccg gctcaaacca tgacatgtca tggtttgagc gtgacatgtc
     5041 atggttgcct tgccatgata tgtcatggct aagaatagca gggacgggaa tcgagagcgc
     5101 gccgcccggc gccgggcggc tctcgccgag cgtggtatca ggcccattca ggtgctggca
     5161 ccggacgcgg ctcatccttt gatccgtcag gctgcggccc tcatgacccg cgacgatgcc
     5221 cccctggaac cacgggcggc gctgcgtcgg gctggcgggg cgaatgagcc tgagcccggt
     5281 gaggcatcgc ccggcctggc tgcggaactg gaagctgcca aagccaggat cacggaaatc
     5341 gagcgtcagg cagaggcgca gagggtcatg gcggacgacg ccgcagagcg tcagaggcgg
     5401 gcgctagagg ttgagcagga gaaggcgcgc gcgagcgcag aggaggccca gaaggccgcc
     5461 agatccgccc aggtagccga agggcgggcg gcagaggcgc tacggcgcgc ggagaaggcg
     5521 gaagccacca tacggcaggc caaggctcta ccgggcctca aaggccggct tgtgcgcctt
     5581 ctggccggcg aggtgctgaa gtggcctgat tgacggcctc caccatcga
//
