LOCUS       NC_010331               3936 bp    DNA     circular BCT 12-FEB-2008
DEFINITION  Francisella philomiragia subsp. philomiragia ATCC 25017 plasmid
            pFPHI01, complete sequence.
ACCESSION   NC_010331
VERSION     NC_010331.1  GI:167626220
KEYWORDS    .
SOURCE      Francisella philomiragia subsp. philomiragia ATCC 25017
  ORGANISM  Francisella philomiragia subsp. philomiragia ATCC 25017
            Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales;
            Francisellaceae; Francisella.
REFERENCE   1  (bases 1 to 3936)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
            Land,M., Hauser,L. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of plasmid of Francisella philomiragia subsp.
            philomiragia ATCC 25017
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3936)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2008) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3936)
  AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
            del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
            Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
            Land,M., Hauser,L. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2007) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000938.
            URL -- http://www.jgi.doe.gov
            JGI Project ID:  2773039
            Bacteria available from ATCC: ATCC 25017
            Contacts: Patrick Chain (chain2@llnl.gov)
                      Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LLNL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3936
                     /organism="Francisella philomiragia subsp. philomiragia
                     ATCC 25017"
                     /mol_type="genomic DNA"
                     /strain="ATCC 25017"
                     /db_xref="ATCC:25017"
                     /db_xref="taxon:484022"
                     /plasmid="pFPHI01"
     gene            join(3817..3936,1..822)
                     /locus_tag="Fphi_0001"
                     /db_xref="GeneID:5907059"
     CDS             join(3817..3936,1..822)
                     /locus_tag="Fphi_0001"
                     /note="KEGG: cvi:CV_2292 hypothetical protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001672023.1"
                     /db_xref="GI:167626221"
                     /db_xref="GeneID:5907059"
                     /translation="MASFYEYIQHVIDSNKFLEEKNLDKKKLNLKDLSGGVNKKFDPS
                     MGRVITMKNNARSDYEKEDRVKKVLEENDYTPSFLKSLDKPYYYYFISFQNSLDDSDD
                     VEELYGRERVDFRRVSIYENMNPSGYLYIDQRQQLFSCIHQLMFIHFILFVNRIKHGD
                     MHMKNIKWIKFHKNNKDFYSVKAFDFGHAEVNCGGIIGSRYTDINYLFKLKSQKKSLV
                     GFFEGRSRFNDYISGENQNRMEKHFPLHHLLTNHQVPNLRKIHKNIAIDFLNREGDRL
                     ERNLREIKDKNITNEYSCNLVLKEFAASSERVVGILR"
     gene            1458..2378
                     /locus_tag="Fphi_0002"
                     /db_xref="GeneID:5907061"
     CDS             1458..2378
                     /locus_tag="Fphi_0002"
                     /note="KEGG: ssn:SSON_PC01 Rep"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001672024.1"
                     /db_xref="GI:167626222"
                     /db_xref="GeneID:5907061"
                     /translation="MKNNNSILAQKQHITQLKNNQTRIQRLFSFNTKIQNNICDCGRY
                     IQLNKKRNYDTAEIKKEVEQAYTCKYRYCPLCNYYRICSVSPQMVKALEDQQNKGNKI
                     LFLTLTVPNCDYSETRKTISNMNRAYKRLTEQNLFKNIEAWIRTTEVTFNTKGEAHPH
                     FHIALAVNENYFKKGNYKTTREWSKIWSKAYKSDKQLIVDIRKSYKSKKHSKRDLDIH
                     STVKELAKYCIKSTDLQRIKTPENMEIIFNQLKGLRFIATSQNIKLSEDKKDELNSNE
                     WELIESIILKYYPDMKQYLHHRTVSKNETV"
     gene            2365..2646
                     /locus_tag="Fphi_0004"
                     /db_xref="GeneID:5907060"
     CDS             2365..2646
                     /locus_tag="Fphi_0004"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001672025.1"
                     /db_xref="GI:167626224"
                     /db_xref="GeneID:5907060"
                     /translation="MKQFDLFGGFSKPTKSKTKTGNQGRPKKITPGVVFETKKLLSSK
                     KKISNDEIMQKLNLTKSIFYRIKKGYYDDLFKRFLETNIQNFSLTQEEN"
     gene            complement(3155..3415)
                     /locus_tag="Fphi_0003"
                     /db_xref="GeneID:5907058"
     CDS             complement(3155..3415)
                     /locus_tag="Fphi_0003"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001672026.1"
                     /db_xref="GI:167626223"
                     /db_xref="GeneID:5907058"
                     /translation="MDNLAFKIQLGVILPKLDEKISKSTLEIFDELVGFVQSGEVEGQ
                     DINVEEIKEILVKDFEIFLDKKIIPKSQKLKKEEASEEIEEA"
ORIGIN      
        1 tttgatccaa gtatgggacg tgttattaca atgaaaaata acgcaagaag tgattatgaa
       61 aaagaagata gagtgaaaaa agttttagaa gaaaatgatt atactccttc attcttaaaa
      121 tcattagaca aaccatatta ttattatttt atatcattcc aaaatagttt agatgatagt
      181 gatgatgttg aagaattata cggtcgcgaa agagttgatt ttcgtagagt tagtatttac
      241 gaaaatatga atccatccgg atatttatat atagatcaaa ggcaacaatt attttcctgt
      301 attcatcagt taatgtttat tcattttatt ttattcgtaa atagaataaa gcatggagat
      361 atgcatatga aaaatattaa atggattaaa tttcacaaaa ataataaaga tttttattct
      421 gttaaggctt ttgattttgg gcatgctgag gtgaattgtg gtgggattat aggttcacgt
      481 tatactgata ttaattattt atttaaattg aaatctcaaa aaaaatctct cgtaggattt
      541 tttgagggca gatcaagatt taatgactat ataagtggtg aaaatcaaaa tagaatggaa
      601 aagcactttc cattacatca tttgttaacc aatcaccaag taccaaattt aagaaaaatt
      661 cataaaaata ttgctattga ttttttaaat cgagaaggtg atcgattgga gagaaattta
      721 agagaaatta aagacaaaaa tattactaat gaatattcat gtaatttagt tctcaaagaa
      781 ttcgcagcat catctgaaag agtagttggt atacttagat gaaattttat tctggattgc
      841 ttatagaggt tttaaggcga tttaagagcc atttttgatt ttaacgtgaa aaactatatc
      901 gaagcttaaa atcgcttaaa atcgctttct atgtttccag aatgcgacaa tttgaagtgg
      961 ctagccgtct gcaagactat tagccttgat gatttttaaa atgtccaaaa atgataatac
     1021 aatcataaca taatcatttt tttgttttct gttttatttt gttttctttc tcagtttctt
     1081 ttttgtcttt tgctatgact tgctttagtc tttctttttg agattttttc cttttgagaa
     1141 agttaaacat ttttctgttc ttctgagttg aatgtctaat ttttccacct tttttcttaa
     1201 agctcaatat gcattgactg cgtcaaagta aaattgagtt gttttcacag ttagtaaaaa
     1261 tcgctaatcg ctggatttta acccctgcaa aaatgaaaaa atgaagcttg agaagatcgc
     1321 caaaaaaggc gaagccgttt tggtctttac ttgatacaaa gtatattgga aacaagtgca
     1381 gattttatga ttgaatagat acaaaaaaag tcctatactt ttaagcgacc aaactaaaaa
     1441 atacaggact aattttaatg aaaaataata attcaatttt ggcacaaaag caacacataa
     1501 cccaattgaa aaataatcaa actcgcatac aacgattatt ttctttcaac acaaaaatac
     1561 aaaataacat ttgtgattgt ggtcgctata ttcagctaaa caaaaaaaga aattacgata
     1621 cagcagaaat taaaaaggaa gttgaacaag cttatacatg caaatatcgt tattgtccgt
     1681 tgtgtaatta ttaccgtatt tgttctgtgt ctcctcaaat ggttaaagca cttgaagacc
     1741 aacaaaacaa aggaaataag atattgtttc taaccttaac tgttccaaat tgcgattatt
     1801 cagaaactag aaaaactatc tcgaatatga atagggcata taagagattg actgaacaaa
     1861 atttatttaa aaatattgaa gcttggatac gaactacaga agtaacattt aacacaaaag
     1921 gcgaagcaca cccacatttt cacattgccc tagcagttaa tgaaaactac ttcaaaaaag
     1981 gtaattacaa gactactaga gagtggtcta aaatatggtc aaaagcttac aagagcgata
     2041 agcaattaat cgtagatatc cgaaaatcat acaagagtaa aaagcactca aagagagatt
     2101 tagacattca ttcaactgtt aaagagttgg ctaaatactg cataaaatca accgacttgc
     2161 agagaattaa aacccctgaa aatatggaga ttatattcaa tcaattaaag ggtttgaggt
     2221 ttattgccac tagtcaaaac atcaaactat cagaagataa aaaagatgag ttaaattcta
     2281 atgaatggga actaattgag tcaattattt tgaagtacta cccagacatg aaacaatatt
     2341 tacatcatag aacggtatca aaaaatgaaa cagtttgatt tgtttggggg attttctaaa
     2401 cctacaaaat caaaaactaa aactggtaat caagggcgac caaaaaagat aacgcctgga
     2461 gttgtttttg aaactaaaaa acttttgagt tccaaaaaga aaatctcaaa tgatgaaatt
     2521 atgcaaaaac ttaatctaac aaaatcaatt ttttatcgaa tcaagaaagg ttattatgat
     2581 gaccttttta aaagattttt agaaacgaac attcaaaact tttcacttac tcaagaagag
     2641 aattagataa gatatatttt tttatttttt ttgctcatac cctttttgaa aaagtaaaat
     2701 ttatcttttg tattgctttt gtatcaagct ttttagtgtt cgacgctatt cgctctttaa
     2761 acaagcatct tgaagcatct tttagatttt tctaaaggct cattatccat tgaaaaaatt
     2821 tcaatggtaa ttcgtagaaa atagacacgc tataaactca aattttgagt ttatagcgtg
     2881 cccttttatc cctgtcaatt tgcataattt ttgagcatag tgacagggtg ataaaactag
     2941 tgatgattaa ttgtactcaa aggggattac tagaatgtta aaaagtgata agccgtttta
     3001 aggcgattta agagccattt ttgattttaa cgtgaaaaac tatatcgaag cttaaaatcg
     3061 cttaaaatcg cttttaaatc atctagaatg agctgttttg atgctgttat tgatttaaaa
     3121 gattatattt cttgatattt ttgattttga tattttatgc ttcctctatt tcttcagatg
     3181 cttcctcttt ctttagtttt tgagactttg gtattatttt tttatcaaga aatatttcaa
     3241 aatcttttac tagaatttct tttatttctt ctacatttat gtcttgacct tctacttctc
     3301 cggattgaac aaaacctaca agttcatcaa aaatctctaa agttgatttt gatatttttt
     3361 cgtctaattt tggaagtatt acacctaatt ggattttaaa agctaagttg tccattttaa
     3421 tctatattgt ttttttttga ttttgatatt ttctcataaa agttttgtga ttaaaaaaat
     3481 atttacactt tccagaatgc gacaatttga agtggctagc cgtctgcaag actattagcc
     3541 ttgatgattt ttaaaatatt aaaaaataat aatgcagtca taacagatta ttgaaggcaa
     3601 taaaaataac tgccctttat tagcctttga aagaatttga acctttgata atgctaaatt
     3661 gcgaatagcg ttaaggggtg tgctttcttt gagtgttatt tttagaacta aagtgaatta
     3721 gaaaggaaag cacaataaaa tcatagcata attatttttt tgttttatac gtttaggttt
     3781 attgttacaa tgtttttttt ggcaattttt taatatatgg caagttttta cgaatatatt
     3841 cagcatgtta tagattctaa taaattttta gaagaaaaga atcttgataa aaaaaaatta
     3901 aatcttaaag atttatccgg tggggttaat aaaaaa
//
