LOCUS       NC_002182               7501 bp    DNA     circular BCT 27-JAN-2005
DEFINITION  Chlamydia muridarum Nigg plasmid pMoPn, complete sequence.
ACCESSION   NC_002182
VERSION     NC_002182.1  GI:10957566
KEYWORDS    .
SOURCE      Chlamydia muridarum Nigg
  ORGANISM  Chlamydia muridarum Nigg
            Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia.
REFERENCE   1  (bases 1 to 7501)
  AUTHORS   Read,T.D., Brunham,R., Shen,C., Gill,S.R., Heidelberg,J.F.,
            White,O., Hickey,E.K., Peterson,J., Umayam,L.A., Utterback,T.,
            Berry,K., Bass,S., Linher,K., Weidman,J., Khouri,H., Craven,B.,
            Bowman,C., Dodson,R., Gwinn,M., Nelson,W., DeBoy,R., Kolonay,J.,
            McClarty,G., Salzberg,S.L., Eisen,J. and Fraser,C.M.
  TITLE     Genome sequences of Chlamydia trachomatis MoPn and Chlamydia
            pneumoniae AR39
  JOURNAL   Nucleic Acids Res. 28 (6), 1397-1406 (2000)
   PUBMED   10684935
REFERENCE   2  (bases 1 to 7501)
  CONSRTM   NCBI Microbial Genomes Annotation Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2000) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 7501)
  AUTHORS   Read,T.D., Brunham,R., Shen,C., Gill,S.R., Heidelberg,J.F.,
            White,O., Hickey,E.K., Peterson,J., Umayam,L.A., Utterback,T.,
            Berry,K., Bass,S., Linher,K., Weidman,J., Khouri,H., Craven,B.,
            Bowman,C., Dodson,R., Gwinn,M., Nelson,W., DeBoy,R., Kolonay,J.,
            McClarty,G., Salzberg,S.L., Eisen,J. and Fraser,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2000) The Institute for Genomic Research, 9712
            Medical Center Dr, Rockville, MD 20850, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AE002162.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..7501
                     /organism="Chlamydia muridarum Nigg"
                     /mol_type="genomic DNA"
                     /strain="MoPn"
                     /db_xref="taxon:243161"
                     /plasmid="pMoPn"
     gene            98..1015
                     /locus_tag="TCA01"
                     /db_xref="GeneID:1245522"
     CDS             98..1015
                     /locus_tag="TCA01"
                     /note="identified by sequence similarity; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="virulence plasmid integrase pGP7-D"
                     /protein_id="NP_038276.1"
                     /db_xref="GI:10957569"
                     /db_xref="GeneID:1245522"
                     /translation="MNSKFYHRSRLFLTFGEASEIWLSTLSPLTRKNYASGIKFLVSL
                     KVLDLTKTLDNAISFDHSESLFKIKSLTIFNGKPVSEASKQARAACYISFTKFLYRLT
                     KGYINPAIPLKDFGNTTFFKIRDRVKTVSISKKEWTVFFEALRLVSYRDYLIGKLIVQ
                     GIRKLDEILSLCMEDLFFASNQISFRIKKRQNKEINIPITFPFSLMKELKDYVGGRNG
                     RVFISEDGSPIATSQVVHNFKIAALRSAMTTKITPRVLRASALIHLKQMGLRDEEIMR
                     VSCLSSKQSLCSYVCSGGNSSVANIPTIL"
     gene            complement(1064..2086)
                     /locus_tag="TCA02"
                     /db_xref="GeneID:1245521"
     CDS             complement(1064..2086)
                     /locus_tag="TCA02"
                     /note="identified by sequence similarity; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="virulence plasmid integrase pGP8-D"
                     /protein_id="NP_038277.1"
                     /db_xref="GI:10957568"
                     /db_xref="GeneID:1245521"
                     /translation="MRLGYITRNFVGKGILSLQQEMPLEYIGKSYQEVLKIRQESYWK
                     RMRSFSLFEVIMHWTASLNQHTCRSYRGSFLALEKIGLLSLDMNLQEFSLLNHNLILD
                     AIKKIPSSKASWTEGTKQVRAASYISLTRFLNRMTQGIVSIAQPSKQENSRTFFKTRE
                     IVKTNAMNRLQTASFLKELKKINPRDWLIAQTMLQGGKRSSEVLSLEIDQICFQQATI
                     SFSQLKNRQTEKRIIITYPQKFMHALREYIGPRRGLVFVTSSGKMVGLRQIARTFSQA
                     GLQASIPFKITPHVLRATAVTEYKRLGCSDSDIMKVTGHTTAKMVFAYDKSSREDNAS
                     KKMALI"
     gene            2154..3509
                     /locus_tag="TCA03"
                     /db_xref="GeneID:1245519"
     CDS             2154..3509
                     /locus_tag="TCA03"
                     /note="identified by sequence similarity; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="virulence plasmid helicase pGP1-D"
                     /protein_id="NP_038278.1"
                     /db_xref="GI:10957567"
                     /db_xref="GeneID:1245519"
                     /translation="MKTNSEIENRMQDIEYALLGKALVFEDCTEYILRQLVNYEFKCS
                     RHKNIFIVFKHLKDNALPITVDSAWEELLRRRVKDIDKSYLGIMLHDAMFNDKLRPIS
                     HTVLLDDLSVCSAEENLTNFIFRSFNEYNENPLRRSPFLLLDRIKDRLDRTIAKTFST
                     RSVRGRSVYDIFSQAELGVLARIKKRRAAYSENNDSFYDGLPTGYQDIDSKGVILANG
                     NFVIIAARPSIGKTALAIDIAINIAIHQRRRVGFLSLEMSAGQIVERIISNLTGVSGE
                     KLQRGSLSEEEIFCIEEAGNTIRDSHLYICSDNQYKLNLIANQIRLLKRDDRVDVIFI
                     DYLQLINSSVGENRQNEIADISRTLRGLAAELNIPIVCLSQLSRKVEDRANKVPMLSD
                     LRDSGQIEQDADVILFINRKETSPNCEITVGKNRHGSVFSTVLQFDPKTSKFSAIKKV
                     W"
     gene            4703..5425
                     /locus_tag="TCA04"
                     /db_xref="GeneID:1245520"
     CDS             4703..5425
                     /locus_tag="TCA04"
                     /note="identified by sequence similarity; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein pGP3-D"
                     /protein_id="NP_038279.1"
                     /db_xref="GI:10957573"
                     /db_xref="GeneID:1245520"
                     /translation="MTEPLTDQQIILGTSTTPVAAKITASEGISLTITNNAQANSSVN
                     IGLDAEKAYQLILDKLGDQIFDGITGSIVESAVQDIIDKITSDPSLGLLKAFYNFQIT
                     GKIQCNGLFTSSNVTTLLGGTEIGRFTVTPRSSGSMFLVSADIIASRMEGGVVLALVK
                     EGDTQPCAISYGYSSGVPNLCSLKTCVTNSGSTPTTYSLRIGGLESGVVWVNALSNGN
                     DILGITNTSNVSFLEVIPQKNT"
     gene            5494..5802
                     /locus_tag="TCA05"
                     /db_xref="GeneID:1245517"
     CDS             5494..5802
                     /locus_tag="TCA05"
                     /note="identified by sequence similarity; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein pGP4-D"
                     /protein_id="NP_038280.1"
                     /db_xref="GI:10957572"
                     /db_xref="GeneID:1245517"
                     /translation="MQNKRKLRNDFIKIVKDVEKDFPELDLKIRVNKERVTFLNSPLE
                     LYHKSISLILGLLQQIEKSLELFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE
                     "
     gene            5819..6625
                     /locus_tag="TCA06"
                     /db_xref="GeneID:1245518"
     CDS             5819..6625
                     /locus_tag="TCA06"
                     /note="identified by sequence similarity; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="virulence plasmid ParA family protein pGP5-D"
                     /protein_id="NP_038281.1"
                     /db_xref="GI:10957571"
                     /db_xref="GeneID:1245518"
                     /translation="MEYTLQTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKRVLLIDLD
                     PQSNLSSGLGASIEGNHKGLHEVMCASNDLKSIICKTKKTGVDIIPASFLSEQFREFS
                     TNGIPSSNLRLFLDEYCSPLYDVCIVDTPPSLGGLTKEAFIAGDKLIVCLIPEPFSIL
                     GLQKIREFLISIGKPEEEHILGVALSFWDDRSSTNQTYIDIIESIYENKIFSTKIRRD
                     ISLSRSLLKEDSVINVYPTSRAATDILNLTHEISALLNSKHKQDFSQRTL"
     gene            6622..7362
                     /locus_tag="TCA07"
                     /db_xref="GeneID:1245523"
     CDS             6622..7362
                     /locus_tag="TCA07"
                     /note="identified by sequence similarity; putative"
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein pGP6-D"
                     /protein_id="NP_038282.1"
                     /db_xref="GI:10957570"
                     /db_xref="GeneID:1245523"
                     /translation="MNKLEKEASVFFKKNQESVSQDFKKKVSSIEMFSTSLNSEENQS
                     LDRLFLSETQNLSDEESYQEDVLSVKLLTSQIKAIQKQHVLLLGEKIYNARKILSKSC
                     FSSTTFSSWLDLVFRTKSSAYNALAYYELFISLPSTTLQKEFQSIPYKSAYILAARKG
                     DLKTKVSVIGKVCGMSNASAIRVMDQLLPSSRSKDNQRFFESDLEKNRQLSDLLVELL
                     RIVCSGVFLSPYNENLLQQLFEVYKQKS"
ORIGIN      
        1 gcaactcttg gtggtagact tagtcgggat agacttttgt gtaaaaaaaa aataaactct
       61 tgagactctg aatcagagtc atattgttta agaaaagatg aactcaaaat tttaccacag
      121 aagtaggcta ttcctaactt ttggagaagc ttcggaaatt tggttgtcaa cgttgtcccc
      181 gctaactaga aagaattatg catctggaat taagttttta gtttctctga aggttttgga
      241 tttaaccaaa accttagata acgccatttc ctttgatcac agcgagtctt tgtttaagat
      301 caaatctcta accattttta atgggaaacc tgtttcagaa gcttctaaac aagccagagc
      361 tgcttgttac atatcattta ctaagttttt gtacagattg actaaggggt atattaatcc
      421 tgctattcct ttaaaagact ttggtaacac tacatttttt aaaattagag atagagtcaa
      481 aacagtttcg atttctaaga aggagtggac ggtatttttt gaagcgcttc gtttggtgag
      541 ttatagagac tatctaattg gcaaattaat tgtgcaaggc attaggaagt tagacgagat
      601 tttatctttg tgcatggagg atctcttttt tgcatctaat caaatttcgt ttcggattaa
      661 aaaaagacaa aataaagaga ttaatatccc tattacgttt cctttcagtt tgatgaaaga
      721 attgaaagat tatgttggtg gaagaaatgg gcgtgtgttt atttctgagg atggatctcc
      781 cattgcaaca agtcaagtag tgcataattt taaaatagca gcgcttcgga gcgcaatgac
      841 aactaaaatc actcccagag tgcttcgagc tagcgcgttg attcatttga aacaaatggg
      901 attaagagat gaagaaatta tgcgagtttc ttgtctttcc tcgaagcaaa gtttgtgttc
      961 ttatgtttgt tctggcggga actcttctgt cgcaaatata ccaactatat tgtgatataa
     1021 ttaaaattat atccatttag ttgccctcaa aagcaactgt agattatatt agggccatct
     1081 tctttgaggc attgtcttct ctagaggatt tatcgtacgc aaataccatc tttgcggttg
     1141 tgtgtcctgt gaccttcatg atgtcggagt ccgaacaccc taggcgtttg tactctgtca
     1201 cagcggttgc tctaagcacg tgaggggtta tcttaaatgg gatagatgct tgcagtcctg
     1261 cttgagagaa cgtgcgggca atttgtctta accccaccat ttttccagaa ctagttacga
     1321 agaccaaacc tcttcgtggc ccaatgtact ctcttagagc gtgcatgaac ttctgaggat
     1381 aagttataat aatcctcttt tctgtctgac gattcttaag ctgggagaaa gagatagttg
     1441 cttgttgaaa gcagatctga tcgatctcta agcttaagac ttcagaagaa cgcttacctc
     1501 cttgcagcat agtttgggcg atcaaccaat ctctgggatt gatttttttt agttctttca
     1561 agaaagaagc tgtttgcaat ctattcattg catttgtttt tacaatttct ctggttttga
     1621 aaaatgttcg gctgttttct tgtttagaag gttgtgcgat agaaacaatt ccctgagtca
     1681 ttctgtttaa aaatctagtc aaagagatat aactagctgc acgaacttgt ttggtgcctt
     1741 ctgtccatga agcttttgac gatggaatct ttttaattgc atccaatatc aagttatgat
     1801 tcaaaagaga aaattcttgt agattcatgt ctaaagacaa tagcccaatc ttttctaaag
     1861 ctaaaaaaga gcctcggtaa gatctacaag tatgctgatt tagtgatgca gtccaatgca
     1921 tgataacttc gaataaagag aagcttctca tgcgtttcca gtaagattct tgtcggattt
     1981 ttaatacttc ctgataagac tttccgatat attctaatgg catttcttgc tgcaaagata
     2041 aaatcccttt acccacgaaa ttcctcgtga tataacctaa acgcaaatgt cctgattagt
     2101 gaaataatca ggttatcatt aggatagcac gcgctgcatt tttttagaaa agcatgaaaa
     2161 ctaattctga aatagaaaac cgcatgcaag atattgagta tgcgttacta ggaaaagctt
     2221 tggtatttga agactgtaca gagtacattc ttaggcaact tgttaattac gaattcaagt
     2281 gctctcgcca taaaaacata ttcattgttt ttaaacactt aaaagacaac gctctgccaa
     2341 taactgtaga ttcagcttgg gaagagctgt taagaaggcg tgtcaaagat atagataagt
     2401 cttatctcgg tataatgtta catgatgcca tgtttaacga taagctcagg cctatttcgc
     2461 atacggttct tttagatgac ttaagtgtat gtagcgctga agaaaattta actaatttca
     2521 tttttcgttc gtttaatgaa tataacgaaa atccattgag acgatcacca tttttactat
     2581 tagaccgcat aaaagatcgt ctcgacagaa ctatcgcaaa aactttttct actcgtagcg
     2641 ttagaggacg atctgtttat gatatctttt ctcaagcaga actcggagta ttagctcgta
     2701 taaaaaaaag aagggcggct tattctgaga ataatgattc attttatgac ggcttgccaa
     2761 ccggatatca agatattgat agtaaagggg ttattttagc gaacggcaat tttgtgataa
     2821 ttgcagctcg gccttctata gggaaaaccg cactcgctat tgatatagct atcaatattg
     2881 ctatccatca acgacgtaga gttggttttt tatctcttga aatgagtgca gggcaaatag
     2941 ttgaaagaat tatttctaac ttaacagggg tatctggaga gaaattacaa aggggctctc
     3001 tatctgaaga agagattttt tgcattgaag aagcaggaaa tactataaga gattctcatc
     3061 tttatatttg tagtgacaac caatataagc tcaatttgat agcgaatcaa attcgtttgt
     3121 taaaacgaga tgatcgtgtc gacgttattt ttatcgatta cttacaactt attaactcat
     3181 ctgttggaga aaatcgacaa aatgaaatag cagatatatc tagaacttta agggggttag
     3241 ctgcagagct aaacattcct atagtttgtt tgtctcaatt atccagaaaa gtcgaggata
     3301 gagcaaacaa agttcctatg ctgtcagacc taagagatag cggtcaaata gaacaggatg
     3361 cagatgtaat tttgttcatc aatagaaagg aaacttctcc taattgtgaa ataacagtgg
     3421 gtaaaaatag acatggatcg gttttctcta ctgtattaca gttcgatcca aaaacaagta
     3481 agttctctgc tattaaaaaa gtatggtaaa ttatagcaac tgtcacttca ttagaagtcc
     3541 tattcatctt gagaatcaga agtttggtag aagaccaggt caattaatca agatatctcc
     3601 taagttagct caaaatggct tagtagaagt cataggtctt gactttcttt cttctcatta
     3661 ccacgcacta gctgctatcc agagattact tacagctaca aattataagg ggaatacaaa
     3721 aggagttgta ttatcaagag aatcaaacag cttccaattc gaaggttgga ttcctcgaat
     3781 tagatttaca aaaacagagt tcttagaagc ttacggcgta aaacgataca aaacatctag
     3841 aaacaaatac gaatttagtg ggaaagaatc tgaaacagct ttagaggctc tgtatcattt
     3901 aggacatcaa cctttcttga tagtggcaac cagaactcga tggaataatg ggacgcctat
     3961 tttagatcgt tatcaaaccc tttcgcctat tattagaatt tacgaaggat gggaaggtct
     4021 aactgatgaa gaaaatacag aaattgatgt aacaccattc aattcaccat caacacgaaa
     4081 gcataaagga ttcattgtag aaccttgtcc catcttggta gatcaaatag actcttattt
     4141 cgtagtcaag cctgcgaacg tataccaaga aataaaaatg cgtttcccaa acgcatcaag
     4201 atatgcttac acctttattg attggataat tactgcatct gccaaaaaga aaagaaaatt
     4261 gaccaaagag aattcttggc cagaaaactt gtctctgaat gttaacgtta aaagccttgc
     4321 gtatatttta aggatgaatc gatatatcag cacaagaaac tggaaaaaaa ttgaaatggc
     4381 tattgataaa tgtgttgaaa tagctattca actaggttgg ttatctagtc ggaaacgagt
     4441 agagttctta gaagcatcta agctgtctaa aaaagagatc ttgtatttaa acaaagaacg
     4501 ctttgaagaa ataacaagaa aatcaaaaga acaaatgaat caattcgagc aagaatttaa
     4561 ttaaaaaata gcaaaacttg aaactaaaaa ccaaatttat ttaaagctca aaataaaaag
     4621 agtttttaaa atgggaaatt ctggttttta tttgcataac actagcaact gtgtatttgc
     4681 cgacaatatt aaagttgggc aaatgacaga acctcttaca gatcaacaaa taatacttgg
     4741 gacatcgaca actcctgtcg cagcaaaaat aacagcttct gaagggatat ccttaacaat
     4801 aacaaacaat gctcaagcta actcttcagt aaatattgga ttagatgctg aaaaagcgta
     4861 ccaacttatt ttagataagc ttggcgacca aatctttgat ggaatcacag gatccatagt
     4921 tgagagtgct gtacaggaca ttatagataa gattacctcg gacccttctc taggattgtt
     4981 gaaggctttc tataacttcc aaatcactgg gaaaattcaa tgtaacggcc tattcacatc
     5041 tagcaatgta acaactttat taggaggaac agaaataggt agatttacag taactcctag
     5101 aagttctgga agcatgtttt tagtttctgc agatatcatt gcatcaagaa tggaaggtgg
     5161 agttgtatta gccttagtaa aagaaggaga tacacaacca tgtgcgatta gctatggcta
     5221 ttcttctggt gtgcccaatt tatgtagctt aaaaacctgt gttactaatt ccggatcgac
     5281 acccacaact tattcattac gaataggagg attagagagc ggagttgtat gggttaatgc
     5341 tctatccaat ggtaatgata ttcttggaat aacaaatact tctaacgttt cttttttgga
     5401 ggtgatacct caaaaaaaca cttaaataat tttattggaa ttttcttatc ggttttatat
     5461 ttagaagaaa cagttctaat tacgggggtt gttatgcaaa acaaaagaaa actgagaaac
     5521 gattttatta aaattgttaa agatgtagaa aaggatttcc ccgagctaga cttgaaaata
     5581 cgggtgaata aggaaagggt tactttttta aattcaccct tagaactcta ccacaagagt
     5641 atttcattaa ttttaggctt gttacaacaa atagaaaagt ctttggaatt atttccagat
     5701 tcccccgttc ttgaaaaatt agaggataac agtttaaagc taaaaaaagc gttgattatg
     5761 cttattctgt ctagaaaaga catgttttct aaggcagaat agatgtttta ctctaacgtt
     5821 ggagtacact ttgcaaacct tagttttttg ctcttttaag ggtgggacag gaaaaacaac
     5881 actttccctg aatgtagggt gtaatttagc tcaattttta ggaaagagag tacttctaat
     5941 tgacctagat ccccaatcaa atctctcatc tggattgggg gctagcatcg aaggcaacca
     6001 taaaggcctt cacgaagtga tgtgtgcctc aaatgattta aaatcaataa tttgtaaaac
     6061 aaaaaaaact ggggtagaca taatccctgc atcatttttg tcagaacaat ttagagaatt
     6121 ttctacaaat ggcatcccaa gcagcaattt acggctgttt ttagatgagt attgttcgcc
     6181 tttatatgat gtgtgcatag tagatactcc acctagtctt ggtggattaa caaaagaagc
     6241 ctttattgca ggagacaaac taatcgtatg tttgattcct gagccatttt ctattctcgg
     6301 gctgcagaaa attagagaat ttttaatttc tataggcaaa cctgaggaag aacatattct
     6361 tggggtagca ctatcttttt gggatgaccg gagttcgact aatcaaacgt acatagatat
     6421 cattgagtca atttacgaaa ataagatttt ttcaacaaaa atacgcagag atatttcttt
     6481 gagtcgttcc cttcttaaag aggattctgt gatcaatgta tatccaactt caagagctgc
     6541 aacagatatt ctgaatttaa cacacgaaat atctgctctt ttaaattcta aacacaaaca
     6601 agacttttcc cagaggacac tgtgaataaa ctggaaaagg aagctagcgt cttttttaaa
     6661 aaaaatcagg aatccgtttc tcaagacttt aagaaaaagg tttcttcaat tgagatgttt
     6721 tcaacttctt taaattcgga ggaaaaccag agtctggatc ggcttttttt gtctgagact
     6781 cagaatttat cagatgaaga atcttaccaa gaagatgttt tgtcagtaaa acttctgaca
     6841 agtcaaataa aggctattca aaaacaacac gtgctccttc ttggagagaa gatttacaat
     6901 gcgagaaaga tactaagtaa aagttgtttc tcttcaacaa ccttttcatc ttggctagat
     6961 ttagttttca ggactaaatc atccgcctat aatgcgttgg cttattatga acttttcata
     7021 agtctaccaa gcacaacttt gcagaaagag ttccaatcaa tcccgtataa gtctgcatat
     7081 attttagctg ctaggaaagg agacttaaaa acaaaagtct ctgttatagg gaaagtttgt
     7141 ggaatgtcca atgcatctgc tatccgggtt atggaccaac ttcttccttc atctagaagt
     7201 aaagataatc aaagattttt cgaatctgat ttagagaaaa atcgacagtt atcagatctt
     7261 ctcgtagaac tgcttcgcat tgtatgttct ggagttttct tatctcctta taacgaaaac
     7321 cttctgcagc agttgtttga agtctataag caaaagagct gatccgccgt cagctcttat
     7381 atatatatct attatatata tatattttag ggattcgatt ttacgagagc ttcgcgcaac
     7441 tcttggtggt agaccttgca actcttggtg gtagaccttg caactcttgg tggtagacct
     7501 t
//
