LOCUS       NC_008501               3361 bp    DNA     circular BCT 31-OCT-2006
DEFINITION  Streptococcus thermophilus LMD-9 plasmid 2, complete sequence.
ACCESSION   NC_008501
VERSION     NC_008501.1  GI:116326684
KEYWORDS    .
SOURCE      Streptococcus thermophilus LMD-9
  ORGANISM  Streptococcus thermophilus LMD-9
            Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 3361)
  AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
            Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
            Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
            Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
            Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
            Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
            Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
            Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
            Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
            Kozyavkin,S., Weimer,B. and Mills,D.
  TITLE     Comparative genomics of the lactic acid bacteria
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
   PUBMED   17030793
REFERENCE   2  (bases 1 to 3361)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2006) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3361)
  AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
            Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
            Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
            Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
            Genome Consortium and Fidelity Systems Inc.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2006) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000421.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 2662188
            Source DNA and bacteria available from Robert Hutkins
            (rhutkins1@unl.edu)
            Contacts: Robert Hutkins (rhutkins1@unl.edu)
                      Paul Richardson (microbes@cuba.jgi-psf.org)
            Annotation done by Kira Makarova and Eugene Koonin
            Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
            http://www.fidelitysystems.com
            Project Information available at:
            http://genome.jgi-psf.org/mic_home.html
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3361
                     /organism="Streptococcus thermophilus LMD-9"
                     /mol_type="genomic DNA"
                     /strain="LMD-9"
                     /db_xref="taxon:322159"
                     /plasmid="2"
     gene            complement(77..505)
                     /locus_tag="STER_B1"
                     /db_xref="GeneID:4405946"
     CDS             complement(77..505)
                     /locus_tag="STER_B1"
                     /codon_start=1
                     /transl_table=11
                     /product="Molecular chaperone (small heat shock protein)"
                     /protein_id="YP_796431.1"
                     /db_xref="GI:116326685"
                     /db_xref="GeneID:4405946"
                     /translation="MLNKIQPRNSDTYSMTPFDFFEDFSRNLFNDFKSNLIKTDIHET
                     DNEYLVEAELPGIPKENIQVTYEDGVLTISGQQQIDTVDEDKKGKLIRSERSSTSLRR
                     QYLLENVKEDEIKASYSDGILKVTLPKDSNKEIKKSIPIE"
     gene            2200..3144
                     /locus_tag="STER_B2"
                     /db_xref="GeneID:4405947"
     CDS             2200..3144
                     /locus_tag="STER_B2"
                     /codon_start=1
                     /transl_table=11
                     /product="Plasmid rolling circle replication initiator
                     protein"
                     /protein_id="YP_796432.1"
                     /db_xref="GI:116326686"
                     /db_xref="GeneID:4405947"
                     /translation="MDKIQNQEEILVDKNSRGKDRNWRGRKILSLKLADIFKELQYKD
                     SLIERVATCGDTLRFIRREDGSLKLYQAYFCKNKLCPMCNWRRSMKYSYQTSRIVDEA
                     IKQEPKARFLFLTLTVKNVEGEALNSTISQLTKSFDRLFRRAKVKKNLLGYLRSVEVT
                     HNENDNTYHPHIHVLMMVKSSYFKGGNYISQIEWSGIWSQSLKVSYTPMVDIRTVKET
                     GKGLRGAVLETAKYPTKPIKLDVENMQVVDDLYNGLYRKRQLGYGGLFKTIKKQLQLD
                     DVENGDLIHTSDDKENISKGTEIVAIWNVTKQNYYLKK"
ORIGIN      
        1 caagatttta acactctcaa aaaagaaaag gcgcctataa aattttatag acgtctcttt
       61 tcgtaatttt taattactac tcaattggaa tagatttttt tatttctttg ttgctatctt
      121 ttggcaaggt tactttaaga attccatctg aataagaagc ctttatttcg tcttctttaa
      181 cattttctaa taaatattga cgtcggagac ttgttgaact acgttcgcta cgaatcaact
      241 ttcctttttt atcttcgtct actgtatcaa tttgttgttg cccactaatt gttaatactc
      301 cgtcttcgta agtaacttga atgttttctt taggaatacc aggaagttca gcttctacaa
      361 gatattcatt atcagtttca tgaatatctg ttttgattaa attggactta aaatcattga
      421 ataaattacg actaaagtct tcaaaaaaat caaaaggcgt catactatat gtgtctgagt
      481 tgcgtggttg aatcttattt aacataataa tcactccttt ctatattctc acttcaattg
      541 ttattatagt ccaaaaaagt cagttttcaa gtattatgtc tttgaaattg taaaatcgtg
      601 ctacgggcgt tttatagggg tttaacaacg tcactatttt agttcgtcca actgttggac
      661 aattaggacg ttttataccg acattttcta acaaattcaa ttgttcgcaa aacgaacaaa
      721 caaaccttgt tctttctagt acactaaatt taattgttcc taaattgtgc gacgtggtag
      781 aatttggaag ctcttaaatg tcgtaacgtt tcgacatttg gaagctccta aatgttgtaa
      841 cgttgcaata tttggaagtt cttaaaagcg actacgtggt cgtatttgat atatgtaggg
      901 tgtaaaattt tccacgacct agcaagaaag aaagtcaaag actacgttat caagttggaa
      961 aatgtccaac caaattggaa aaattccaac cagtttccaa ccagtgtcca acagagatag
     1021 agttagaatt agagttaaat ctagatataa agacagaagt agaagagaga aatagacaga
     1081 tgtcttctgc tactgctgaa ttacacttat aagcgtctat cacaaactgt tagacaattc
     1141 taaccaaacg acaaccattt ggcaacccaa tataagtaaa gataatataa gtaaagtcag
     1201 tataagtgaa gatagtataa gtgaatataa ttcagtaaaa gataattcat gtggtcaact
     1261 tggttggttg agttgccttg agctgttagt cttttttgac taatagctat aaattttagc
     1321 caggcgattt atgccgagaa aactcttgtc agtaagctga gcgatttaga ctgaaagtgt
     1381 ctgagtcgca agactgaaag cttgcgataa ggacacgaag tctagaaaat cagcgaaagg
     1441 ttacttgctg acaagaggaa attggaataa aaagccttaa tttttgagtg atgtgatttc
     1501 ttccatgtca tatctctttc atatgcccct aattctcaaa tttcgggggt tatttgccgt
     1561 tttaccgtct ctctagtaaa tgtaccgcta gattatttag gacggttaca agcgatttta
     1621 gagccatttc ttgccctttt ggataaagta agctctgact tgctttcctt tatcggtacg
     1681 ctgtatcata gcaatttatt ttgctatgtt cagctttatg atgtggtcgg tcatatcttg
     1741 cagatctcca agggtggtac atttttgggt catccttaaa tagtcctcgt ttttggcaaa
     1801 accatatagc tagatgttcg aacctgctca aatttgagcg tattgaaatc ttgattttgc
     1861 tgtgtagttg taactacgga gccatatttc tcgttgttct ctcgtgcttc tttggtgaat
     1921 ttttcctgaa agtaaaaaga gggctgaaag cccaaaaaaa gcagtcgaaa gactgctttc
     1981 ttcttatctt gatactagta ggaaataact ctcacgcaaa aaacatatca ccatgacctt
     2041 gtaaaccctt gatactactg gatttttagg caaaaaaaaa gctcctttac ggtataaagc
     2101 tttcgtgtta taatttaagg tgcttaatca aaaattatga aaggataacg taaggagttt
     2161 tttttatttc tttgttatta taacaggtaa gattatatca tggataaaat ccaaaatcaa
     2221 gaggaaattc ttgtcgataa aaacagccga ggaaaagata ggaattggag aggacgaaaa
     2281 atattaagtt tgaaattagc tgatatcttt aaagaattgc agtacaaaga tagtcttatt
     2341 gagcgagtgg caacgtgtgg tgatactttg cgatttattc ggcgagaaga tggttcttta
     2401 aaattatatc aggcttattt ctgtaaaaac aagctatgtc ctatgtgcaa ttggagacgt
     2461 tcaatgaaat actcttatca gacatcaagg attgtagacg aagctataaa acaagaacct
     2521 aaagcacgct tcctatttct gacattgact gttaagaatg ttgagggtga agccttgaat
     2581 agtacgatta gtcagctgac aaaatcattt gaccgtttat ttagacgtgc taaagtaaag
     2641 aaaaatctgt tagggtattt acgttctgta gaagtcactc ataacgaaaa tgataataca
     2701 tatcaccctc atatccatgt tttgatgatg gtaaaatcta gttattttaa aggtgggaat
     2761 tacatttcac aaatagagtg gagtggaata tggtcgcagt cactcaaggt ctcttacacg
     2821 cctatggtag atattcgaac agtcaaagag actggcaaag gactgagagg ggcagtcttg
     2881 gaaaccgcaa aatatccaac taaaccgatt aagcttgatg tagagaatat gcaagtggta
     2941 gatgacctat ataacggtct gtatcgaaaa agacaactcg gctatggtgg tctatttaag
     3001 acaatcaaga agcaattaca acttgatgat gttgaaaatg gcgatttaat tcatacgtct
     3061 gacgataaag aaaatatctc aaaaggtaca gaaatagtcg ctatttggaa cgtcacaaag
     3121 caaaattatt atctgaaaaa ataaaatcaa gcttctcgaa agaggggctt tttttattgt
     3181 atgacacccc ttaaaattct agaaaattgg tgcgtgacgt gagaaaatac cttgtggtgg
     3241 ctctcctaag cacgagaatg ggcggggggc gttttaaata gtatcaaggg taaatctacc
     3301 agtcaactat aaaatcgtgc tacgggcttt ttagagggct ttagtgatgt cctagaaaaa
     3361 t
//
