LOCUS       NC_008500               4449 bp    DNA     circular BCT 31-OCT-2006
DEFINITION  Streptococcus thermophilus LMD-9 plasmid 1, complete sequence.
ACCESSION   NC_008500
VERSION     NC_008500.1  GI:116326679
KEYWORDS    .
SOURCE      Streptococcus thermophilus LMD-9
  ORGANISM  Streptococcus thermophilus LMD-9
            Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
            Streptococcus.
REFERENCE   1  (bases 1 to 4449)
  AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
            Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
            Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
            Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
            Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
            Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
            Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
            Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
            Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
            Kozyavkin,S., Weimer,B. and Mills,D.
  TITLE     Comparative genomics of the lactic acid bacteria
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
   PUBMED   17030793
REFERENCE   2  (bases 1 to 4449)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2006) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4449)
  AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
            Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
            Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
            Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
  CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
            Genome Consortium and Fidelity Systems Inc.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2006) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000420.
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 2662188
            Source DNA and bacteria available from Robert Hutkins
            (rhutkins1@unl.edu)
            Contacts: Robert Hutkins (rhutkins1@unl.edu)
                      Paul Richardson (microbes@cuba.jgi-psf.org)
            Annotation done by Kira Makarova and Eugene Koonin
            Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
            http://www.fidelitysystems.com
            Project Information available at:
            http://genome.jgi-psf.org/mic_home.html
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them.
            (http://www.genome.gov/page.cfm?pageID=10506376).
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4449
                     /organism="Streptococcus thermophilus LMD-9"
                     /mol_type="genomic DNA"
                     /strain="LMD-9"
                     /db_xref="taxon:322159"
                     /plasmid="1"
     gene            complement(65..385)
                     /locus_tag="STER_A1"
                     /db_xref="GeneID:4405942"
     CDS             complement(65..385)
                     /locus_tag="STER_A1"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_796427.1"
                     /db_xref="GI:116326680"
                     /db_xref="GeneID:4405942"
                     /translation="MVNWTQLFNRNERQDSSKDEWAEYTEKSLQDFMKSEFMQSFAED
                     CSQMLKDEGNEFYESYDTIKAKMNSVLTDFGYMSLEVYEDAFSEEKQLEDLLKFKAEY
                     LASK"
     gene            complement(1030..1611)
                     /locus_tag="STER_A2"
                     /db_xref="GeneID:4405943"
     CDS             complement(1030..1611)
                     /locus_tag="STER_A2"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA segregation ATPase FtsK/SpoIIIE or related
                     protein"
                     /protein_id="YP_796428.1"
                     /db_xref="GI:116326681"
                     /db_xref="GeneID:4405943"
                     /translation="MSEFYPANRIAVEIDDVLRMLSYVCDKISSRQKIVADGVKTHQK
                     MGLRAYDLGLSPIVVMADEIGSLVASMDSKQKKEFLALVTQIVQKGRSVSCFAIFGTQ
                     SPKTDTTLSSDIRSQFATKILLGLASGENQRMAFDGEVARKGNIERFKGFYVSDGKTE
                     QPMLFHVPDLHSHGLNDLKIIKKAYELGFSGNQ"
     gene            complement(2378..3484)
                     /locus_tag="STER_A3"
                     /db_xref="GeneID:4405944"
     CDS             complement(2378..3484)
                     /locus_tag="STER_A3"
                     /codon_start=1
                     /transl_table=11
                     /product="Predicted transcriptional regulator"
                     /protein_id="YP_796429.1"
                     /db_xref="GI:116326682"
                     /db_xref="GeneID:4405944"
                     /translation="MGRNPYASMVYKVDWFAFTVSDEIDTNGAEKGFVLLENLGYDLD
                     EFEPIPGRYFYNSGLTLGGYVNLYYNDYEKNLARNTSNSRNYVFTGQGCTDLAQKINN
                     DWVGLFSILKKLGVKITRFDIALDDFNGVLSFPRMENKLVKGHYRSSKKTYNVVKQAD
                     VNGDIKGYTLYIGSQAKSSTGTYFLRCYDKFAQYKEKAQIPPKEAIDTGIWQRYEISY
                     TKKKARKIVDLMTDEGRTIGSVFMDTMRDIVEFLEPTKTQAKAIHKNKNRWKVSKWWQ
                     DFLDSAEKVQLGEAERDLDLGGLLRWLRVSVVPALKLLEELGDAKGFDIHQIIKDITP
                     SDYSKKQKRLFNNAMKQSSREIMTYLERFKEGEY"
     gene            complement(3609..4016)
                     /locus_tag="STER_A4"
                     /db_xref="GeneID:4405945"
     CDS             complement(3609..4016)
                     /locus_tag="STER_A4"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_796430.1"
                     /db_xref="GI:116326683"
                     /db_xref="GeneID:4405945"
                     /translation="MSEEQTNGLSQLRKLQALQAQKKAQAKTSSMVKLENIVGVYLGT
                     EPTEHFPKILDSNGNKVQEEKNGRKVDKRSETSDGWTYTFAEFATCKTIKIVLPQRVN
                     VQLMGAYKLGGLGYDIKSGNMYFIEKDTTITNY"
ORIGIN      
        1 tcctcccttt ccgtattgtt gaccttgtgc tttttcgatt gtgccgacga aaagaataaa
       61 ccaactactt agaagctaga tattcagcct taaatttcaa caagtcttca agttgctttt
      121 cttcagaaaa agcatcttca tacacttcaa gtgacatata cccaaaatct gtaagaacag
      181 aattcatttt agctttgatt gtatcataac tttcataaaa ctcattacct tcgtctttta
      241 gcatttgact acaatcttca gcaaaacttt gcataaactc agatttcata aagtcttgaa
      301 gacttttttc agtatattca gcccattcat cttttgaaga atcttgacgt tcattgcgat
      361 taaataattg tgtccaattt accataatgt aaatcctcct ttctttcttt gtacttttat
      421 tataccacgc ttttatataa tattaaggga gggtttcata tctagaaaac ccattaatac
      481 caacgattaa cagacttttc ttgcactttt aatttgacta aatttgccga ttttgctaaa
      541 ataaatgcac ctatttggtc aattttataa ctaattaagc agaaaagaga catatatgtc
      601 aaaatataaa agaaaattaa acataaaatg gtttgcaact acaaagctag gaatcgaaga
      661 gcttgccaaa aatacagact tctcattaac atcatcagat ttcagacttc tgttttattt
      721 actttcaaaa attgatgagg acaatctagc aaccttacca aaacaaaaag atatatctac
      781 tgaaataaat atttcagtaa gaaaaatctc agaaggatta cgacgattac atgaagctaa
      841 aatcatagtc aaatctggta agccaaaaac ttatttcatc aatccagcct ttttttacac
      901 tggaggagct caagttttag aacttaaaca agaagatttt gacagtaact ttgcccccaa
      961 agtagacaca tatactccaa tcgctgatgc tgctgaacta gaacgtcaat tacaaaccaa
     1021 tccatatctt tattgattac ccgaaaagcc taattcatag gcttttttta tgatttttaa
     1081 gtcatttaaa ccatgtgagt gtaggtcagg aacatgaaac aacatcggct gttctgtttt
     1141 accatcagac acgtagaagc ctttaaaacg ctctatatta ccttttcttg ccacttcccc
     1201 atcaaaagcc atacgttgat tttcgccact agccaaccct aataatatct tagtagcgaa
     1261 ctggcttcta atatcgcttg ataacgtagt atcagtttta ggcgactgtg ttccgaatat
     1321 tgcaaagcaa gaaacgctac gtcctttttg aacaatctga gtgacaaggg ctaaaaattc
     1381 ttttttctgc ttactatcca ttgaagccac taacgaccca atttcatcag ccattacaac
     1441 gataggtgac aaacctaaat cataggcacg taagcccatt ttttgatgtg ttttgacacc
     1501 gtcagcaact atcttttggc gtgagctaat tttatcgcaa acatacgaca acattctcaa
     1561 aacgtcatca atttcaactg caatacggtt agctggataa aattcagaca tagcactaaa
     1621 ttcattttta gggtcaacta tatagatttc agatttcgac cacatcaatg attgaacaag
     1681 caaagatatt aaggtagttg atttgccagc tcctgatttc ccccaacaaa tgatatgtgg
     1741 gaaatcagct agatttatct tcaatccttc ttgtaaggtc aacacgtgac taggttgttt
     1801 catctgtttt aaggtcgctg gtcgccaagt tttatcagtt gccacgtctt ctagtacaaa
     1861 tttataagtc agtccgtccg tcgttatcat tccagacgtt actgcataac agcctaattt
     1921 ccctttaaag ctagaattta tatcttctgt cagtctctcg atgtcgtaca taccagctaa
     1981 tttctcgact tctacgctga tgcgtgaggg tctgctatca cacaccctca cgctcggaac
     2041 cgaaataaag ggggtatctt gcagacgatt aactgacatt gtagccagca agctcttagt
     2101 aaccgccttt tctgctcctc gttgtgtgat atatttgccg attgtccccg ctttgatcac
     2161 tgactttgtc agtgaatacg ctcgccaaat cgtcaaaata gcgaccagcg accaaagccc
     2221 aattatgcca aattggcata atttagacgg aacaaaataa ccaattacca aaaacaatac
     2281 cgcaagccca aagactagcc cccaccatgc caaaaattga gcgtataaag gcactttata
     2341 gacgttttga gcgttctttt tatacgtctt tgccatatta gtattcacct tctttaaagc
     2401 gctcgagata agtcataatc tcacgacttg actgcttcat tgcattgtta aacagacgtt
     2461 tctgtttttt cgaataatca cttggcgtaa tatctttaat aatttgatga atatcaaaac
     2521 cttttgcatc cccaagttct tccagcaact ttaaggctgg cacaactgat acacgcaacc
     2581 agcgaagcaa accgcctaaa tctaagtccc gttctgcttc tccaagttga actttttcag
     2641 cactatcaag gaaatcttgc caccatttcg aaactttcca acgattctta ttcttatgga
     2701 ttgcctttgc ttgcgttttc gtcggctcta aaaattcaac aatgtctctc atcgtatcca
     2761 tgaaaacaga accgatagtt cgtccctcat ccgtcattaa atcaacgatt ttacgggctt
     2821 tcttctttgt atatgaaatc tcataacgtt gccaaattcc cgtgtctatc gcttcttttg
     2881 gcggaatttg tgccttttct ttgtattgag caaatttatc gtaacaccgt agaaaatacg
     2941 tcccagtgct cgacttcgct tgtgagccaa tatatagagt atatccttta atgtcgccgt
     3001 ttacgtcggc ttgcttaaca acgttataag tctttttaga cgacctataa tgtcccttaa
     3061 ctagtttatt ttccatcctc ggaaaactaa gaactccatt gaaatcatct aacgcaatat
     3121 caaaacgcgt aatttttaca cctaattttt ttaagattga aaatagtcca acccaatcat
     3181 tattgatttt ttgcgccaaa tccgtgcaac cttgacccgt aaaaacataa ttacgactat
     3241 tcgacgtgtt acgtgccaaa tttttctcgt aatcgttata gtaaagattt acatatccgc
     3301 ccaatgttaa accagaatta tagaaataac gtcctggaat tggttcaaat tcgtctaaat
     3361 cataacctaa attttcaagc aaaacgaagc ctttttcagc tccatttgtg tctatttcat
     3421 cagacacagt aaaagcgaac cagtcaacct tgtaaaccat tgatgcgtaa gggtttctac
     3481 ccattctaac acccctattc tcgtatctgt agaccccctg attagtgttc ggggtctatc
     3541 tgctggaacc tagttccagc agtcccgaaa tttctatttt agcaatgaca taaatgtcat
     3601 gttcaaatct agtaatttgt gatagtcgta tctttttcaa taaagtacat gttacccgat
     3661 ttaatgtcat aacctaaacc gcctaactta taagccccca ttagttgcac gtttacacgt
     3721 tgtggaagta caatcttaat cgtcttacaa gtcgcaaatt cagcaaacgt ataagtccac
     3781 ccatccgatg tttctgaccg tttatctact tttcgaccgt tcttttcttc ctgtactttg
     3841 tttccgttac tatctagaat tttcggaaag tgttcagtcg gctcagttcc caggtaaaca
     3901 ccaacaatat tttctaattt gaccatgctc gatgtcttgg cttgtgcctt tttttgagct
     3961 tgtagagctt gcaattttcg caattgtgat aatccgtttg tttgttcttc tgacatataa
     4021 aaaatgtcct ttctttagtg aatttttaac gcttgtacac cgccaaaatt tactaaagaa
     4081 aagacactaa gatatttttt ttcaaaattt cataacttga ccgtaagaga taaagtttga
     4141 tataatgaag ttgcgaatat ttagggtctt gtaaagtaaa ctttgatcgg ttagtacaag
     4201 actttttttt atgcttaaaa acagaattgc gacgttcttt tttaagctat gtagacatta
     4261 taacacagaa aatcaatcaa taaaagacgg tcccccgtgt tctgttcccg tgggtttcca
     4321 cccacacccg acaagcgtag gacgcttgac cccacctctg aaaagaatta ctgctcagtt
     4381 gatttattct tttcgtcggc tttcacaatc tagcacttga tcaacaatac ggaaagggtc
     4441 gctctcgct
//
