LOCUS       NC_009346               5153 bp    DNA     circular BCT 19-APR-2007
DEFINITION  Shigella sonnei Ss046 plasmid pSS046_spB, complete sequence.
ACCESSION   NC_009346
VERSION     NC_009346.1  GI:145294031
KEYWORDS    .
SOURCE      Shigella sonnei Ss046
  ORGANISM  Shigella sonnei Ss046
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5153)
  AUTHORS   Yang,F., Yang,J., Zhang,X., Chen,L., Jiang,Y., Yan,Y., Tang,X.,
            Wang,J., Xiong,Z., Dong,J., Xue,Y., Zhu,Y., Xu,X., Sun,L., Chen,S.,
            Nie,H., Peng,J., Xu,J., Wang,Y., Yuan,Z., Wen,Y., Yao,Z., Shen,Y.,
            Qiang,B., Hou,Y., Yu,J. and Jin,Q.
  TITLE     Genome dynamics and diversity of Shigella species, the etiologic
            agents of bacillary dysentery
  JOURNAL   (er) Nucleic Acids Res. 33 (19), 6445-6458 (2005)
   PUBMED   16275786
REFERENCE   2  (bases 1 to 5153)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2007) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5153)
  AUTHORS   Yang,J., Yang,F., Chen,L. and Jin,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2007) State Key Laboratory for Moleclular
            Virology and Genetic Engineering, Microbial Genome Center of
            Chinese Ministry of Public Health, 100 YingXin Street, XuanWu,
            Beijing 100052, P.R.China
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CP000642.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5153
                     /organism="Shigella sonnei Ss046"
                     /mol_type="genomic DNA"
                     /strain="Ss046"
                     /db_xref="taxon:300269"
                     /plasmid="pSS046_spB"
     gene            1..1566
                     /gene="cea"
                     /locus_tag="SSON_PB01"
                     /db_xref="GeneID:4991510"
     CDS             1..1566
                     /gene="cea"
                     /locus_tag="SSON_PB01"
                     /codon_start=1
                     /transl_table=11
                     /product="colicin E1 protein"
                     /protein_id="YP_001139957.1"
                     /db_xref="GI:145294032"
                     /db_xref="GeneID:4991510"
                     /translation="METAVAYYKDGVPYDDKGQVIITLLNGNPDGSGSGGGGGTGGSK
                     SESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQHLKDIVNEAL
                     RHNSTHPEVIDLAHANNAAMQAEAERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIE
                     KEQAETERQLKLAEDEEKRLAALSEEARAVEVAQKNLAAAQSELAKVDEEINTLNTRL
                     SSSIHARDAETNTLSGKRNELDQASAKYKELDERVKLLSPRANDPLQSRPFFEATRLR
                     ARAGDEMEEKQKQVTASETRLNQISSEINGIQEAISQANNKRSTAVSRIHDAEDNLKT
                     VQTNLLNSQIKDAVDATVSFYQTLSEKYGEKYSKMAQELADKSKGKKISNVNEALAAF
                     EKYKDVLNKKFSKADRDAIFNALEAVKYEDWAKHLDQFAKYLKITGHVSFGYDVVSDI
                     LKIKDTGDWKPLFLTLEKKAVDAGVSYVVVLLFSVLAGTTLGIWGIAIVTGILCAFID
                     KNKLNTINEVLGI"
     gene            complement(1563..1904)
                     /gene="imm"
                     /locus_tag="SSON_PB02"
                     /db_xref="GeneID:4991511"
     CDS             complement(1563..1904)
                     /gene="imm"
                     /locus_tag="SSON_PB02"
                     /codon_start=1
                     /transl_table=11
                     /product="colicin E1 immunity protein"
                     /protein_id="YP_001139958.1"
                     /db_xref="GI:145294033"
                     /db_xref="GeneID:4991511"
                     /translation="MSLRYYIKNILFGLYCALIYIYLITKNNEGYYFLASDKMLYAIV
                     ISTILCPYSKYAIEHIFFKFIKKDFFRKRKNLNNAPVAKLNLFMLYNLLCLVLAIPFG
                     LLGLFISIKNN"
     gene            1952..2089
                     /gene="lys"
                     /locus_tag="SSON_PB03"
                     /note="synonym: kil"
                     /db_xref="GeneID:4991512"
     CDS             1952..2089
                     /gene="lys"
                     /locus_tag="SSON_PB03"
                     /codon_start=1
                     /transl_table=11
                     /product="colicin E1 precursor lysis protein"
                     /protein_id="YP_001139959.1"
                     /db_xref="GI:145294034"
                     /db_xref="GeneID:4991512"
                     /translation="MRKRFFVGIFAINLLVGCQANYIRDVQGGTVAPSSSSKLTGISV
                     Q"
     gene            complement(2372..2743)
                     /locus_tag="SSON_PB04"
                     /db_xref="GeneID:4991513"
     CDS             complement(2372..2743)
                     /locus_tag="SSON_PB04"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_001139960.1"
                     /db_xref="GI:145294035"
                     /db_xref="GeneID:4991513"
                     /translation="MSKKQSTGRSQRRRRFSIGSAPLTSITKIDAQARGGETRQDYKD
                     TRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISARCRSFAPSWAVCT
                     NPPFSPTAAPYPVTIVLSPTR"
     gene            complement(2931..3125)
                     /gene="rom"
                     /locus_tag="SSON_PB05"
                     /db_xref="GeneID:4991514"
     CDS             complement(2931..3125)
                     /gene="rom"
                     /locus_tag="SSON_PB05"
                     /codon_start=1
                     /transl_table=11
                     /product="probable RNAI modulator protein"
                     /protein_id="YP_001139961.1"
                     /db_xref="GI:145294036"
                     /db_xref="GeneID:4991514"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHEL
                     AEELQNSIQTRFEVENSTER"
     gene            3409..3732
                     /gene="mobA"
                     /locus_tag="SSON_PB06"
                     /db_xref="GeneID:4991515"
     CDS             3409..3732
                     /gene="mobA"
                     /locus_tag="SSON_PB06"
                     /note="plasmid mobilization protein A"
                     /codon_start=1
                     /transl_table=11
                     /product="MobA"
                     /protein_id="YP_001139962.1"
                     /db_xref="GI:145294037"
                     /db_xref="GeneID:4991515"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR
                     AAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLS
                     RLMAD"
     gene            complement(3957..4376)
                     /gene="exc"
                     /locus_tag="SSON_PB07"
                     /db_xref="GeneID:4991516"
     CDS             complement(3957..4376)
                     /gene="exc"
                     /locus_tag="SSON_PB07"
                     /codon_start=1
                     /transl_table=11
                     /product="entry exclusion protein 2"
                     /protein_id="YP_001139963.1"
                     /db_xref="GI:145294038"
                     /db_xref="GeneID:4991516"
                     /translation="MRRTGNKLCLIAMITATVALTACTPKGSVEQHTRHYVYASDDGF
                     DPNFSTQKADTTRMMVPFFRQFWDMGAKDKATGKSRSDVQQRIQQFHSQEFLNSLRGT
                     TQFAGTDYRSKDLTPKKSRLLADTISAVYLDGYEGRQ"
     gene            complement(4457..4876)
                     /gene="exc1"
                     /locus_tag="SSON_PB08"
                     /db_xref="GeneID:4991517"
     CDS             complement(4457..4876)
                     /gene="exc1"
                     /locus_tag="SSON_PB08"
                     /codon_start=1
                     /transl_table=11
                     /product="entry exclusion protein 1"
                     /protein_id="YP_001139964.1"
                     /db_xref="GI:145294039"
                     /db_xref="GeneID:4991517"
                     /translation="MAWHTLRDALKMTGRSRSQFYRDMRSGLVSYRTSQDGRREFETS
                     ELIRAYGELKRNETPERHTQGHSEKPHDQQTERILRELNELKQCLTLMLEDKQAQDTE
                     RRRQEAERKQLQNEIAQLRQALEQEKKRGFWSRLFGH"
ORIGIN      
        1 atggaaacag ctgtagcgta ctataaagat ggtgttcctt atgatgataa ggggcaggta
       61 atcattactc ttttgaatgg taatccagac gggagtggct ctggcggtgg tggtggaact
      121 ggaggtagca aaagtgaaag ttctgcagcc attcatgcca cagctaaatg gtctactgct
      181 caattgaaga aaacgcaggc agaacaggct gcccgagcaa aagctgccgc agaagcacag
      241 gctaaagcaa aagcaaaccg ggatgcgctg actcaacatc tgaaggatat tgtgaatgag
      301 gcgcttcgcc ataattccac tcatccggag gttattgacc tggctcatgc caataatgca
      361 gcgatgcagg cagaagcaga gcggttgcgc cttgcaaaag cagaagaaaa agcccgtaaa
      421 gaagcggaag ctgcggaaaa ggcttttcag gaagcagaac aacgacgtaa agagatagag
      481 aaggagcagg ctgaaacaga acgccaattg aaactggctg aggatgaaga gaaacgcctg
      541 gcagcattga gtgaagaggc ccgggctgtg gaggtggcac aaaaaaatct tgctgctgca
      601 caatctgagc tggcgaaagt ggatgaagag attaatacgc tcaatacccg tttaagctcc
      661 agtattcatg cccgtgatgc agaaacgaat acgctgtccg gaaaacgaaa tgagttggat
      721 caggcatctg ctaaatataa agaactggat gaaagggtta aacttttatc tcctagggcg
      781 aatgatccgc ttcagagtcg tccttttttt gaggccacca gactacgggc gagagctggt
      841 gatgagatgg aggaaaaaca aaagcaggta acagcatcag aaacgcgtct taaccagatt
      901 agctctgaga taaatggaat ccaagaggct atttctcagg ctaataataa gcgaagtaca
      961 gcagtttcac gtattcatga tgctgaagat aatttgaaaa cagtacagac taatctcctg
     1021 aactcgcaga ttaaggatgc tgtggatgca acagttagct tttatcaaac gctatctgaa
     1081 aaatatggtg aaaaatattc aaaaatggca caggaacttg ctgataaatc taaaggtaag
     1141 aaaatcagca atgtgaatga agctctagct gcttttgaga aatacaagga tgtattaaat
     1201 aagaaattca gcaaagcaga ccgtgatgca attttcaatg cactggaggc ggttaagtat
     1261 gaagactggg ctaagcattt agatcagttt gccaagtact tgaagattac gggacatgtt
     1321 tcttttggat atgatgtggt atctgatatc ctaaaaatta aggatacagg tgactggaag
     1381 ccgctatttc ttacattaga gaagaaagct gtagatgctg gagttagtta tgttgttgtt
     1441 ttacttttta gtgtgcttgc tggaactaca ttaggtatct gggggattgc tattgttaca
     1501 ggcattctat gtgcctttat tgataagaat aaacttaata ctataaatga ggtgttgggt
     1561 atttaattat tctttattga tataaacagt cctagcaatc caaatgggat tgctaggacc
     1621 aaacaaagta gattgtatag cataaatagg tttaattttg ccacgggggc attatttagg
     1681 ttttttcttt ttctgaaaaa atctttcttt atgaacttaa aaaatatgtg ttcaatagca
     1741 tattttgaat atgggcatag aatagtgctt atcactattg cgtatagcat cttatctgac
     1801 gctaggaaat aatacccttc gttgtttttt gttataaggt atatatatat aagtgcgcag
     1861 tataggccaa acaaaatatt ttttatgtag tatcttaaac tcataaatta aacctcgtta
     1921 tatattcttt tcattttata aggatcgagt tatgaggaaa agattttttg tgggaatatt
     1981 cgctataaac ctccttgttg gatgtcaggc taactatata cgtgatgttc agggagggac
     2041 tgtggctcca tcatcttctt ctaaattgac ggggatctct gttcagtaga aaagatcaaa
     2101 ggatcttctt gagatccttt ttttctgcgc gtaatctgct gcctgtaaac gaaaaaaccg
     2161 cctggggagg cggtttgatc gaaggttaag tcagttgggg aactgcttaa ccgaggtaac
     2221 tggcttcagc agagcgcaga taccaaatac tgtccttcca gtgtagccgt agtcgggcca
     2281 ctacttcaag aactctgttg caccatttgc gccatcatcg ctctgctaac caagttacca
     2341 acggctgctg ccagtggcgc taagtcgtgt cttaccgggt tggactcaag acgatagtta
     2401 ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag
     2461 cgaacgacct acaccgagcc gagataccaa cagcgtgagc tatgagaaag cgccacgctt
     2521 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc
     2581 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac
     2641 ctctggcttg agcgtcgatt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac
     2701 gcctgcggcg ctggcttctt ccggtgcttt gctttttgct cacatgttct ttccggcttt
     2761 atcccctgat tctgtggata accgtattac cgcttttgag tgagctgaca ccgctcgccg
     2821 cagtcgaacg tccgagcgta gcgagtcagt gagcgaggaa gcggaagagc gccttatgtg
     2881 acattttctc cttacgctct gttgtgccgt tcggcatcct gtcctgagcg ttatctctct
     2941 gtgctatttt ctacttcaaa gcgtgtctgg atgctgttct ggagttcttc tgcgagttcg
     3001 tgcagcttct cacacatggt agcctgttcg tcagcatcga gtgcgtccag cttttcgagc
     3061 agcgtcaggc tttggctttt tatgaatcct gccatgttga gtacggcttg ctgctgcttg
     3121 ttcatctttt cgttttctcc gttctgtctg tcatctgcgt tgtgtgatta tatcgcgtac
     3181 cacttttcaa ctgttttacc gccggtattc tgccgtctga cgctttgacg ggtatttctg
     3241 cctgacaata ctgtcactgc caaaaaactg ccgtgccttt gtcggtaatt cgaacttgct
     3301 gacaggacag gatgtgtaat tgttataccg cgcatacatg cacgctatta caattaccct
     3361 ggtcagggct ttgccccgac acccatgtca gatacggagc catgttttat gacaaaacga
     3421 agtggaagta atacgcgcag gcgggctatc agtcgccctg ttcgtctgac ggcagaagaa
     3481 gaccaggaaa tcagaaaaag ggctgctgaa tgcggcaaga ccgtttccgg ttttttacgg
     3541 gcggcagctc tcggtaagaa agttaactca ctgactgatg atcgggtact gaaagaagtt
     3601 atgagactgg gggcgttaca gaaaaaactc tttatcgacg gcaagcgtgt cggggacagg
     3661 gagtatgcgg aggtgctgat cgctattacg gagtatcacc gtgccctgtt atccaggctt
     3721 atggcagatt agcttcccgg agagaaaact gtcgaaaact gacggtatga acaccgtaag
     3781 ctcccaaagt gatcaccatt cgctttcatg catagctatg cagagagctg aaaacgatcc
     3841 tgacgcatcc ttcctgtttt tccggggtaa aacatctctt tttgcggtgt ctgcgtcaga
     3901 atcgcgttca gcgcgtttca gtggtgcgta caattaaggg attatggtaa atccacttac
     3961 tgtctgccct cgtagccatc gagataaacc gcagaaatcg tgtcagccag cagcctggat
     4021 tttttcgggg taaggtcttt gctgcggtaa tcagtacccg caaattgagt tgtgccccgg
     4081 agtgagttta aaaattcctg gctgtgaaac tgttgaatgc gttgttgcac atcactccgt
     4141 gattttcctg tcgctttatc tttagctccc atatcccaga actgccgaaa aaaaggcacc
     4201 atcattcgtg ttgtgtcggc tttttgggtg gaaaagttgg gatcaaaacc gtcatcagaa
     4261 gcatatacgt aatgccgggt atgttgttcc acgctgccct ttggggtaca ggctgtgaga
     4321 gctactgttg ctgttatcat ggcgataaga caaagtttgt ttccggtacg tctcatgagt
     4381 gtctccctac cttaaagtat ttattctcgg tgagttatta tccgaagatt atcttatcat
     4441 cagtttctga gcgcgttcag tgaccgaaca gcctggacca gaatccccgt ttcttttcct
     4501 gctccagagc ctgcctgagc tgggctatct cattctgtag ctgtttccgt tctgcttcct
     4561 ggcgccggcg ctccgtatcc tgggcttgtt tatcctcaag catcagcgtc aggcattgtt
     4621 tcagctcatt cagttcccgg agaatgcgtt ctgtctgctg atcatgaggt ttttctgagt
     4681 gtccttgagt gtgcctttct ggtgtctcat tccgctttaa ttcgccgtat gcccggatca
     4741 gttcactggt ttcaaactcc cgtcgtccgt cctggctggt acggtaactg acaagacctg
     4801 agcgcatatc acggtaaaac tgtgaacgcg atcttccagt cattttcagt gcgtcccgga
     4861 gtgtgtgcca tgccataaag ttacagtgtc ccataggtgt ctcatctcat ggtttcagta
     4921 aaacataatg aggtctgaga acggtaatgt ttgtgctggt ttttgtggca tcgggtggaa
     4981 atagcacgtg gtgtgggtgg ctgttttttt gatcgttttc acaaaaatga aaatccacag
     5041 ggttgacagg gaaaatgcag cggcgtaatt ttaaactgta tataaaacca gtgattatat
     5101 atacagtatg ttgcttttaa ctatttgttt ttaatgtcaa agaggatttt ata
//
